PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S07414.10
Common NameJCGZ_06480, LOC105628482
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 1607aa    MW: 177219 Da    PI: 6.219
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S07414.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.9e-0715841607226
                     -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                     +++ C+ f+++G+Ck G++C++ H+
  Jcr4S07414.10 1584 GQRVCK-FYENGYCKKGASCSYLHP 1607
                     6799**.6666*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.104.9E-9120178IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579038.4E-8121171IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.556124190IPR019787Zinc finger, PHD-finger
CDDcd155681.54E-19126171No hitNo description
SMARTSM002494.9E-7126172IPR001965Zinc finger, PHD-type
PROSITE patternPS013590127187IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.105.0E-25357443IPR003121SWIB/MDM2 domain
SMARTSM001510.0018357440IPR019835SWIB domain
SuperFamilySSF475928.94E-20357434IPR003121SWIB/MDM2 domain
PfamPF022012.1E-14376433IPR003121SWIB/MDM2 domain
SMARTSM007192.6E-48498608IPR004343Plus-3 domain
PROSITE profilePS5136026.099498631IPR004343Plus-3 domain
SuperFamilySSF1590425.1E-32499627IPR004343Plus-3 domain
PfamPF031264.5E-23503606IPR004343Plus-3 domain
SuperFamilySSF552772.22E-14844900IPR003169GYF domain
PROSITE profilePS5082914.041847901IPR003169GYF domain
SMARTSM004442.4E-14848903IPR003169GYF domain
Gene3DG3DSA:3.30.1490.403.4E-15849900IPR003169GYF domain
PfamPF022133.5E-9850894IPR003169GYF domain
PROSITE profilePS5010315.06515821607IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-615831606IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-515841607IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-415861606IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1607 aa     Download sequence    Send to blast
MEQQQVQLQE QSKKKDGEEE YRPCIEESRE QRIFDNSLPG ADLMTIDQCE TIREMDDSQL  60
VGPPPSTAVA ARDVDMVDVE VRTASKVVDM TPAKRKRGRP PRIQGKTGPP PPPQQPQRKK  120
RDEEDVCFIC FDGGSLVLCD RRGCPKAYHP ACIKRDEAFF RSKAKWNCGW HICSGCQKAS  180
HYMCYTCTYS LCKGCTKDAD YVGVRGNKGF CGTCLRTIML IENVKLANAE TVQVDFDDKT  240
SWEYLFKIYW VYLKAKLSLT IDELTRAKNP WKGDELSKAK NSWKGAVILA PKEISRGQLY  300
HGNDEKGSFT DNCCGNLEAN HSKRRKTKDQ PNFLNENYSI LMEKLGVDKV TPLPEGTMWA  360
TKELLELVAH MRNGDTSVLS QFDVQALLLE YIKRNNLRDP RQKSQIICDS RLANMFGRPR  420
VGHFEMLKLL EYHYLIKEKS SADDTVGVGV ADTAGGQVEA ARSSDSQMIV GNDKRRKSRK  480
KMDERSPLIN PNADEYAAID VHNINLLYLK RDLIENLMDD SEKFHENVVG SFVRIRISGG  540
DQRQDMHRLV QVVGTSKVAE SYQVGSKTTN VMLEILNLNK KEVVSIDAIS NQEFSEEECS  600
RLHQSIKCGL IKQLKVGEIL EKAMVLKPVK VSDFQSAKVE LFTFPKELRF FFVPISYRLS  660
YILIGXECVE KLELLKSPKE CQRRLLEIPN IHADPNMDPS HESEEDAGES NIKKQGDHAR  720
ERNTGVGRKG IELNSPVREG DLNNAGNMAL TNLAAACEQS INTCTTFYVD KDGTTRVHDR  780
TSESMWSKEG GALGLSSENT SKNLFGSSDS VNDKAAVQSE THTGVAPSVI PPLSPEREQL  840
IGDFETEKLW HYQDPFGIVQ GPFCMMQLRK WSTSGLFPLD FRVWRINEKQ EDSILLTDAL  900
VGQYSKQLLQ PCNSHLEPQE ATVASNDAGK NWKSGFSLST DASWLDGKKV DHDSKPVQND  960
VNIHGGGDSD LVKSNNGLGS HSSTWTKTVD VTMDNDAQAQ SSLQGWDLSK DSKAWTGQSR  1020
ICGSLPSASS PGDLIGTPSN QVREEHGDEK WSSNTNSHRN IDDQTNARET DVKRKRLDSE  1080
GHSNQSSGQN WRTQPITSSS SGWDSNSGFV SAAKSIGKSE LHQEIDFSDL LSPRPKQSHE  1140
DSKDDVAKNK LPLTSNVPVQ DSGPTWSTAS SLVVGEWGGY SSHPKPSVEE WDSNHVSASS  1200
LKPTEGASDH AATPTSGTGP LTHSSSSHPT IDTSSWQPIV PEPNEFCSLV DESVSDLLAE  1260
VEAMESLGLP SPTSKMSCGG ELTPGSDNDC FSPVEPFSPA PDPGKSDALS STSDIHMPSQ  1320
LPAADVVLRL SHTPSQPTVT DELAVSQMHS RLAVTDKHHP LPQMPPRSIV QDEPLGASPM  1380
PQSTLTEEPL GLWHTDVLDA QKSFSRHSPS SAEVVGDTKR SDVSVNQWET RSEPLASSTI  1440
NQREAGSDIR SRTSSSVGQW EAGSDSQRPA SSTADASYGT IKGNANSNQV VSQGNTNMIW  1500
GTGHGSVQQQ ASSNSAISTG ILGSWGSQHQ QRHGGDNRFA GSRDHRNYYQ GRDSGFSRDR  1560
SSWNRQPAYG AGNGGGTFKA QGKGQRVCKF YENGYCKKGA SCSYLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A6e-131201931181Histone-lysine N-methyltransferase NSD3
4gnd_C6e-131201931181Histone-lysine N-methyltransferase NSD3
4gne_A6e-131201931181Histone-lysine N-methyltransferase NSD3
4gnf_A6e-131201931181Histone-lysine N-methyltransferase NSD3
4gng_A6e-131201931181Histone-lysine N-methyltransferase NSD3
4gng_D6e-131201931181Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065289.10.0PREDICTED: zinc finger CCCH domain-containing protein 44
TrEMBLA0A067LE480.0A0A067LE48_JATCU; Uncharacterized protein
STRINGPOPTR_0007s13760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]